Archive related to the PlasMAAG publication. It contains the reads used to evaluate PlasMAAG in a non-human environment (CAMI2 Marine), and in the presence of phages (CAMI2 Skin with phages). The reads were re-simulated from the CAMI2 benchmark datasets so we could: 1) generate the assembly graphs, 2) define distinct abundances for plasmids and cellular genomes, 3) simulate reads that accounted for genome circularity, and 4) we could test for phage contamination on plasmid candidate bins.
